Name: Hi-C LeftVentricle STL003 Rep1

Organism: Homo sapiens

Source: LeftVentricle STL003

RE: HindIII

Sample ID: GSM1419085

Mapping Statistics

File SRR1501142 SRR1501143 SRR1501144 SRR1501145 SRR1501146
Total reads 220,888,982 223,590,528 222,106,700 221,866,613 115,362,663
First pair aligned 214,130,361 (96.94%) 216,677,228 (96.91%) 215,141,596 (96.86%) 215,073,286 (96.94%) 106,148,049 (92.01%)
Second pair aligned 210,455,370 (95.28%) 212,729,973 (95.14%) 211,388,958 (95.17%) 211,287,499 (95.23%) 79,158,311 (68.62%)
PCR duplicate paired reads 39,399,058 (17.84%) 40,044,210 (17.91%) 39,689,134 (17.87%) 39,746,099 (17.91%) 6,756,049 (5.86%)
Chimeric paired reads 47,253,227 (21.39%) 47,682,448 (21.33%) 47,448,648 (21.36%) 47,496,491 (21.41%) 17,566,734 (15.23%)
Valid chimeric paired reads 22,042,152 (9.98%) 22,240,494 (9.95%) 22,133,065 (9.97%) 22,162,214 (9.99%) 8,397,521 (7.28%)
Total mapped/paired reads 188,823,642 (85.48%) 190,829,650 (85.35%) 189,575,969 (85.35%) 189,618,279 (85.46%) 69,668,290 (60.39%)
Valid mapped/paired reads 124,213,509 (56.23%) 125,343,486 (56.06%) 124,571,252 (56.09%) 124,537,903 (56.13%) 53,743,028 (46.59%)

HiC Read Statistics

Total reads 552,409,178
Chromosome not in fends 0 (0.00%)
PCR duplicates 0 (0.00%)
Outide RE cutsite range 5,140,147 (0.93%)
Insert larger than cutoff 69,862,174 (12.65%)
Fragment circularization 4,865,765 (0.88%)
Possible failed RE digest 103,730,654 (18.78%)
Valid cis reads 135,136,736 (24.46%)
Valid trans reads 233,673,702 (42.30%)
Unique cis fend pairs 61,673,596
Unique trans fend pairs 117,532,438

Insert Size Distribution

Fend Intra-chromosomal Interaction Distribution

Fend Inter-chromosomal Interaction Distribution

Best insert size

754