Name: Hi-C LeftVentricle STL003 Rep1
Organism: Homo sapiens
Source: LeftVentricle STL003
RE: HindIII
Sample ID: GSM1419085
| File | SRR1501142 | SRR1501143 | SRR1501144 | SRR1501145 | SRR1501146 |
|---|---|---|---|---|---|
| Total reads | 220,888,982 | 223,590,528 | 222,106,700 | 221,866,613 | 115,362,663 |
| First pair aligned | 214,130,361 (96.94%) | 216,677,228 (96.91%) | 215,141,596 (96.86%) | 215,073,286 (96.94%) | 106,148,049 (92.01%) |
| Second pair aligned | 210,455,370 (95.28%) | 212,729,973 (95.14%) | 211,388,958 (95.17%) | 211,287,499 (95.23%) | 79,158,311 (68.62%) |
| PCR duplicate paired reads | 39,399,058 (17.84%) | 40,044,210 (17.91%) | 39,689,134 (17.87%) | 39,746,099 (17.91%) | 6,756,049 (5.86%) |
| Chimeric paired reads | 47,253,227 (21.39%) | 47,682,448 (21.33%) | 47,448,648 (21.36%) | 47,496,491 (21.41%) | 17,566,734 (15.23%) |
| Valid chimeric paired reads | 22,042,152 (9.98%) | 22,240,494 (9.95%) | 22,133,065 (9.97%) | 22,162,214 (9.99%) | 8,397,521 (7.28%) |
| Total mapped/paired reads | 188,823,642 (85.48%) | 190,829,650 (85.35%) | 189,575,969 (85.35%) | 189,618,279 (85.46%) | 69,668,290 (60.39%) |
| Valid mapped/paired reads | 124,213,509 (56.23%) | 125,343,486 (56.06%) | 124,571,252 (56.09%) | 124,537,903 (56.13%) | 53,743,028 (46.59%) |
| Total reads | 552,409,178 |
| Chromosome not in fends | 0 (0.00%) |
| PCR duplicates | 0 (0.00%) |
| Outide RE cutsite range | 5,140,147 (0.93%) |
| Insert larger than cutoff | 69,862,174 (12.65%) |
| Fragment circularization | 4,865,765 (0.88%) |
| Possible failed RE digest | 103,730,654 (18.78%) |
| Valid cis reads | 135,136,736 (24.46%) |
| Valid trans reads | 233,673,702 (42.30%) |
| Unique cis fend pairs | 61,673,596 |
| Unique trans fend pairs | 117,532,438 |